I disagree. I believe the bushing tolerances allow for the vehicle to be lower by a little. Enough to make a pretty substantial difference on track. Not enough to call it "hellaflush" or "slammed" or whatever the kids are calling it now. I strongly disagree on the stiffer comment. When done well, a car can roll and have great handling characteristics (miata is a perfect example), but it's certainly not true that a stiffer car is harder to drive at the limit. You're more likely to be moving faster and more likely to have a faster let-go when making mistakes, but the vehicle should feel more consistent and respond to correction faster, so it should be easier to drive...provided you understand the dynamics of the vehicle and don't have variable spring rates.
Bingo! Valving and spring pair are very important. The DCC shocks are supposed to adjust to some extent with a different spring, but in my experience so far, the DCC shocks just can't keep up. Your points on weight transfer and seat time are all spot on as well. If you lower this car within the spec of the bushings (I think as far down as the GTI CSS is plenty safe) by choosing a properly mated spring/shock the car will absolutely perform better than stock height. The key though, is another one of your comments on suspension travel. A lower vehicle doesn't have to have a shorter suspension travel on the right spring/shock setup.
as far down as the GTI CSS = only about 20mm more