I have tried troubleshooting this so many times...whether voice commands affect it or not, leaving the card active before shutting off the car or switching to either bluetooth before shutting off. I just can't seem to find what triggers it. It's always on shuffle and randomly starting the car it goes back to my first track alphabetically and the menu is grayed out for 5 minutes or more. Once the menu reappears I scroll to a song and re-enable shuffle. I assume people are all using shuffle when listening to their SD Cards. It seems the shuffle order never changes if you start it from the first song (could be wrong here). The user manual indicates there is a limit to the number of folders. I took this from the manual (on vw website, put in VIN and then search radio manual for SD Card). These are the media requirements for SD Cards:
Requirements for playing audio files.
This thread explains it:
https://www.golfmk7.com/forums/showthread.php?t=32753
Applies to SD memory cards1) and USB storage devices with the FAT16, FAT32, exFAT and NTFS file system:
MP3 files (.mp3) with bit rates of 32 to 320 kbit/s or variable bit rate.
WMA files (.wma) to 10 mono/stereo to 768 kbit/s without write-protection.
WAV files (.wav) (64 - 1411 kbit/s)
OGG-Vorbis files (.ogg) (32 - 576 kbit/s)
FLAC files (.flac) (maximum 96 kHz).
AAC files (.m4a, .m4b, .mp4, .aac) (16 - 400 kbit/s)
Playlists in the M3U, M3U8, PLS, ASX and WPL formats
Playlists no larger than 20 KB and with no more than 1,000 entries.
Maximum of 32 playlists on a data carrier.
Maximum of 1,000 folders and 30,000 files on a data carrier.
The maximum size of an individual file in the FAT32 file system is 4GB.