The primary problem of the OEM PCV is sucking up oil.
Oil will only be forced/sucked up the block passage if there is a considerable pressure differential. (Pressure in bottom end, vacuum up top in the PCV).
Where I put some holes, allows the PCV to pull vacuum on the valve cover as well (because it does not in stock form, it draws through the passage directly on the bottom end, and eventually vacuums the valve cover via near the timing chains, oil return ports, etc).
If pulling a vacuum on two places, fluid will only be pulled upwards if BOTH are submerged. I suspect the block passage gets fully blocked by oil sloshing, which in combination pulls it up. Apparently for some people the MK8 AOS is not enough to do the oil separation efficiently. OR
@GTIfan99 is correct and VW just can't manufacture these things to save their life.
Pulling vacuum in both spots should cut down any chances of slurping oil considerably. It MAY also have the added bonus of allowing oil to drain before it ever makes it to the diaphragm.
Realistically, I'm sure everything going on inside is a chaotic aerated mess, but IMO the reasoning is sound.