I'm not sure if anyone has drawn up or found a pin out for the helix side of the harness, but like you said it's basically 4 pairs of black and red wires (so - black and + red).
For the Helix box, remember that it is also ported. There is a slot port next to the amp recess.
I've thought about upgrading subs in the helix box to something like the infamous Tang Band W5 sub (https://www.parts-express.com/tang-band-w5-1138smf-5-1-4-paper-cone-subwoofer-speaker--264-917) except it's only a 4 ohm SVC. Any other smaller subs are similarly wrong in spec, either dual 4ohm only or single 4 or 2ohm. Anything except for a pair of 2ohm DVC subs will half your output at least.
What you're talking about doing with putting the wires together won't work (the amp will not like that), and I don't believe traditional "bridging" of the helix amp will work. None of their documentation says anything about bridging, but it's not designed to do that. I doubt that feature was added to something that is such a specific DSP/Amp meant to be paired to one specific sub. Even the PP50/52 specs don't state anything about bridging the sub outputs. I'm 99% sure the Helix amps are setup as an 8 channel amp effectively (4 full range and 4 sub channels), with 2 ohms per channel being the lowest stable per channel.
Your best option? Buy an inexpensive mono amp with speaker level inputs and an auto turn on circuit. Pin out 2 of the helix sub outputs to the new amp and you're done. That does mean wiring power to your trunk, but that would put as much power to whatever woofer you'd want to use while still using the DSP.
I just emailed audiotec fishcher asking if the subwoofer outs on the pp 62dsp supported bridging - the answer is a flat no. The helix dsp is basically a stripped down pp 62dsp as far as I can tell. It might work, but I am not going to risk it. So I agree with you that a cheap monoblock amp would be the way to go.
Also, worth noting but to everyone else: the "gain" knob is for input sensitivity on the pp 62dsp. I would HIGHLY doubt that it is a gain control for the sub only on the helix dsp. Raise that too high and you risk damaging the DSP I think.
On another note: this thread is super helpful. I have a 2017 tiguan 4motion that i just put the helix sub in. I am replacing my door speakers (front and back, woofers and tweeters) with polk db6501 and getting an under-floor sub enclosure so I can keep my spare tire and have a box. The tiguan floor is much higher than the non-4motion VW hatchbacks, sedans, and wagons, so mounting the helix sub box on top or below the spare tire is definitely not possible. The box is a sealed enclosure so that will likely change the dual sub output profile quite a bit.
I also have a set of 150 hz crossover bass blockers on their way to me that will go in line before the crossover for the polk components. Goal is to keep the doors solely focused on mids and highs.
I am going to do fronts first, and then test sound profile compared to the rear doors so I can do a bit of A/B testing and will report back here (perhaps also with some build pictures).
Thanks for all the great info everyone!