I just did 2 days in a row at Laguna Seca in my 17 R DSG that has upgraded Neuspeed calipers, isweep 3000 pads, motul 600 fluid, Eibach pro kit springs, 034 top mounts and some 18x8.5 Titan 7 wheels on P4S's and I would recommend to go GTI. When comparing performance metrics both the R and the GTI have their plus and minus. Track configuration, track conditions and driver skill will be the determining factor as to which will be faster on any given day if comparing stock for stock.
My R with no other mods than what I listed was running low 1:47's all day (the day I had timing) in very hot conditions. That's better than I expected for a stock power full weight fully optioned R in damn near 100 degree weather but honestly I wouldn't recommend it for a track day HPDE car. I only did it because my EVO is down waiting for a new transfer case to arrive and my miata's starter decided the day before we left to stop working along with finding a hard to fix oil leak when pulling it off of the storage lift.
Biggest reason for me to pick the GTI over the R would be the weight difference, higher potential cost to maintain the R due to AWD haldex system and more expensive consumables. I wouldn't really think too much about which one would be the better track weapon because if I was concerned about that I wouldn't pick either.
After playing with the XDS at the track I would highly recommend to have it turned off especially if you trail braking like Cliff mentioned. Reason being if you are skilled enough to trail brake effectively then the XDS will just overheat your rear brakes. I've confirmed with a temp gauge that the XDS in fact loads the rear brakes up with a significant amount of heat as Neuspeed warned me before I went to the track. I found though that for myself and given the tires I was on trail braking was slower for me at Laguna. So many factors that can effect this so would need more time at different tracks to really know if this is the best method to get the R around a corner faster. Best thing for me was to be as smooth as possible to maintain as much momentum and use every mm of track width as I could to not scrub off speed from this plow monster
Also, I owned a well sorted mk7 GTI at the same time as my R but recently sold the GTI to my little brother. He brought it to Laguna the same weekend but we really didn't get a chance to run against each other but I am pretty certain that the GTI would have easily outperformed my R given it's pretty well setup and making more power with less weight. That's just my opinion though as I did not get the chance to drive both on the same day.