For me at least, most of the monitors set on there own after a some drive time. The monitoring of catalytic converter and O2 sensor I always have to force the test through obd11. Below is the procedure for that. I have a different car than you so some of the monitors you have don't apply to me (secondary air injection for example).
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TT usually has a weird boxcode but I'm surprised they can't flash their R file to an S3. If they come back saying it has something to do with emissions, ask why there are still people who can't set readiness on their files.Pretty sure he meant not for GTI... all those 3 cars share the same engine.