We've loved this car and taken great care of it, but I'm simply not paying for this work out of pocket.
Firstly, if you’re out of warranty (with it being a ‘17 I suspect you are) don’t expect this to be covered at no expense. Technically VW is under zero legal obligation to take care of this at no cost at this time. Thats the unfortunate reality.
I see you’re in Sonoma, far from me here in the South Bay, otherwise I’d recommend Stevens Creek VW which is who repaired our non-sunroof model. I’ve heard good things about Serramonte, which is still not right around the corner, but closer to you than Stevens Creek.
I’d get it into a dealership and see what they say and then I’d contact VWOA, state your case politely but firmly and ask for a goodwill repair. You did everything you were supposed to do as an owner to help prevent this (performed their recall for their known and abundantly documented design defect).
When the car gets put back together, ask for many photos of the interior before you spend your time driving to go pick it up. Ask to see photos of all the gaps in the panels and for them to ensure they are properly installed/attached tightly. One of my D-pillars literally fell off as I was going down the road. I had to make 3 return trips to Steven’s Creek before it was all together right, but I knew they
would make it right. This was also right at the beginning of pandemic and they had a skeleton crew working, probably not their top people, and I don’t entirely blame them for my return trips given that situation, everybody was hurting.
Good luck.